MS Tools

If you are using MS Tools use this citation in your papers please:
Kavan, D. and Man, P. "MSTools - Web based application for visualization and presentation of HXMS data" Int. J. Mass Spectrom. 2011, 302: 53-58.
http://dx.doi.org/10.1016/j.ijms.2010.07.030.
You can also include the actual link to MSTools: http://peterslab.org/MSTools/

H/D Exchange Calculator: Calculates number of exchangeable hydrogens, monoisotopic and average masses and displays a simple peptide statistics (example result)
H/D Experiment Planner: Creates a time schedule for H/D exchange experiments (example result)
Draw Map: Creates a graphical representation of protein sequence coverage (example result)
Draw H/D Heat Map: Draws graphical representation of H/D exchange using color gradients (heat maps) (example result)
Draw H/D Heat Map (rainbow): Draws graphical representation of H/D exchange using continuous rainbow gradient (PyMol colours) (example result)
Draw Differential H/D Heat Map: Draws graphical representation of H/D exchange difference using color gradients (difference heat maps)
Draw H/D Protection Plot: Creates a protection plot based on data from H/D exchange and allows comparison of various conditions (example result)
JMol Scripter: Visualization of H/D data on protein structure using JMol.
Draw H/D Exchange plots: Draws graphical representation of H/D exchange using plots