plans
- visualization of modification sites or motifs
- hide/show/highlight repetitive sequences - now these are directly shown in the coverage maps and considered in all the calculations. We plan to offer the user the opportunity to pick the solution to these ambiguities.
- analysis of cleavage preferences considering protein modifications (these are disregarded now)
- analysis of missed cleavages, extraction of peptides with missed cleavages and their subsequent re-analysis
- export of non-reproducible peptides
- draw domains and structural elements above the redundancy plot
- extract structural elements from pdf file
- compile basic metrics for all proteins in the dataset - sequence coverage, redundancy, cleavage efficiency, number of peptides
- providing analysis of sequences and their composition used for the graphs of cleavage preferences
- add “compose analyses” feature - will allow grouping analyses to conditions, assigning replicates without the need for “proper” file naming
plans.txt · Last modified: 2025/10/15 07:51 by pman