News:

  • 2026/01/09:

    Fantastic news! Huge dedication and hard work of Jasmin and Luky led to great data on CLC exchange coupling and this fitted perfectly to cryoEM and MD simulations obtained at Stanford by Maduke, Chiu and Dror labs! Joint paper is now out Nat Commun!

  • 2025/12/25:

    Perfect Xmas present 🎄 🎁 for Tomas - his first contribution to a paper and what's even better - it is in the Nat Commun! Collaboration with Roman Sobotka within the Photomachines project.

  • 2025/12/01:

    Great grant news - joint proposal by Ales Hnizda and Alan has been selected for support by the Czech Science Foundation (GACR)! What a continuation of their collaboration, where structural biology meets the clinic.

  • 2025/11/30:

    New Nat Commun paper with the Haitin&Giladi labs is out! Now, with the great molecular dynamics topping from the Giacomello group. Another step towards understanding the mechanism of cis-prenyltrasferases.

  • 2025/10/07:

    Why so quiet in the lab? A big part of peterslab has relocated to Milano 🇮🇹 for the Structural Proteomics Symposium - with 4 talks and 7 posters on the program. Total peterslab invasion. 💥

  • 2025/10/03:

    New paper in N A R ! This project began back in 2020 through the H2020 project EPIC-XS, continued through an Instruct-Internship for Izabella, and kept evolving ever since… now finally reaching its sweet reward. A huge amount of work went into this – experiments capturing fast exchange in poorly structured proteins, and solid proof that DNA “tricks” in HDX-MS really do work. Very happy for Izabella, Dima, Paja, and of course Albane, who led the project.

  • 2025/09/26:

    No more suffering with scripts and macros - interpreting digestion data just got much easier. Our new software DigDig is now released, and the paper is out in Anal. Chem.. To celebrate this, we adopted a DikDik antelope at Prague Zoo - small, agile, and fast, just like our mascot should be. 🐐 Great work of Dan, Zuza and Jasmin!

  • 2025/09/22:

    A big day for Zuzka. Congratulations on nailing the PhD thesis defense 🎉 👏 and becoming a Dogtor🐶!

  • 2025/09/19:

    We just wrapped up an intense and rewarding week at the Structural MS Workshop at BIOCEV. It was a pleasure to work with such enthusiastic participants, and we thank everyone for their energy and contributions. Special thanks go to OP JAK Photomachines and SPIDoc’s MSCA Doctoral Network for funding, to Bruker for software support, and to CIISB Instruct-CZ for access to instrumentation.

  • 2025/08/11:

    Biophysics, HDX-MS and statistical modelling on track of antibiotic sequestration now out in ACS Bio Med Chem Au. Great collaboration with Athi N. Naganathan.

EC
OPJAK
GACR TACR
BlueSky     Twitter!     YouTube

Important:

About laboratory


The Laboratory of Structural Biology and Cell Signaling is a multidisciplinary team focused on two main research directions.
The structural biology group specializes in recombinant protein expression and the structural and dynamic characterization of proteins and protein-ligand complexes. They employ advanced mass spectrometric techniques, including native mass spectrometry, hydrogen/deuterium exchange, chemical and radical footprinting, and protein cross-linking. Beyond applying these methods, the group also actively develops new enzymatic columns for online protein digestion and novel labeling reagents for surface modification and cross-linking. Due to the complexity of the resulting data and the scarcity of commercial tools for analysis, the group invests substantial effort into building customized software solutions.
The clinical proteomics unit explores the molecular basis of a broad spectrum of human diseases - from bacterial and viral infections to diabetes, kidney dysfunction, and neurodegenerative conditions such as dementia. One of the unit’s core strengths lies in its proprietary technology for fabricating protein chips designed for immunoaffinity enrichment of specific proteins from biological fluids, including plasma, serum, and cerebrospinal fluid. These chips are fully compatible with mass spectrometric analysis, enabling highly sensitive, specific, and robust protein quantification. This technology is well aligned with the vision of personalized medicine, offering early diagnostic capabilities that can reduce treatment costs and improve patient outcomes and productivity.
The close collaboration between these two groups creates a unique research platform where biological insights can be validated and understood at the molecular level. The laboratory is located at the BIOCEV center in Vestec.

HDX_workflow Xlink_workflow